A Strategy for Evaluating and Understanding the Interaction Energies of Hydrogen-Bonded Complexes Containing Peptide Amides and Nucleic Acid Bases
首发时间:2014-01-09
Abstract:A strategy is devised aiming to accurately and efficiently estimate the equilibrium hydrogen bond distances and interaction energies of complexes where the binding is dominated by hydrogen bonding. The strategy has included four essential ingredients of hydrogen bonding: the dipole-dipole interactions, the polarization interactions, van der Waals interactions and the covalency. The strategy can yield the equilibrium hydrogen bond distances and the interaction energies for hydrogen-bonded complexes as accurate as the high quality ab initio method MP2/aug-cc-pvTZ does, demonstrating the strategy proposed in this paper is reasonable. Base on the strategy, the components of the interaction energies for the hydrogen-bonded complexes are obtained and the nature of the hydrogen bonding is discussed. The strategy proposed in this paper has a definite physical meaning and points a new way for studying and understanding the hydrogen bonding in biosystems.
keywords: hydrogen bond interaction energy dipole-dipole interaction
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一种可用于计算多肽和核酸碱基氢键复合物相互作用能的方法
摘要:为了准确有效地模拟生物大分子体系中的氢键,本文提出一种可预测氢键复合物中平衡氢键距离和相互作用能的方法。这一方法包含组成氢键的四个必要成分:偶极-偶极相互作用、极化作用、范德华相互作用和共价作用。使用这一方法计算出的平衡氢键距离和相互作用能与包含基组重叠误差校正的MP2/aug-cc-pVTZ方法计算的结果符合得很好,表明本文提出的方法是合理的。在此方法计算结果的基础之上,我们对氢键本质进行了讨论。
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