牡丹bHLH类转录因子基因的分离与序列分析
首发时间:2014-05-30
摘要:利用RT-PCR技术,将牡丹花瓣转录组数据库中7个Unigene序列进行拼接,得到3个bHLH基因,分别命名为PsbHLH1、PsbHLH2和PsbHLH3。设计特异性引物对3个基因最大阅读框(ORF)序列进行扩增,测序结果表明PsbHLH1序列包含一个2076 bp的ORF,编码一个691 aa的肽链;PsbHLH2序列包含一个1830 bp的 ORF,编码一个609 aa的肽链;PsbHLH3序列包含一个1938 bp的ORF,编码一个645 aa的肽链。这3个基因推测所编码蛋白序列均具有典型的碱性-螺旋-环-螺旋结构域。PsbHLH1和PsbHLH3基因编码的蛋白与拟南芥已知的类黄酮调控转录因子Ⅲf 亚族成员蛋白同源性较高;PsbHLH2基因编码的蛋白与拟南芥AtbHLH3蛋白同源性最高。将PsbHLH1和PsbHLH3与其他物种类黄酮代谢调控的bHLH蛋白构建进化树分析发现,PsbHLH1与MdbHLH3、VvMYC1等聚为一支,而PsbHLH3与AmDelila、PhJAF13聚为另一支。
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Isolation and Sequence Analysis of bHLH Transcription Factor Genes in Tree Peony
Abstract:In this study, two Unigene sequences that share high homology with WD40 protein involved in plant anthocyanin biosynthesis were obtained from previous-constructed tree peony (Paeonia suffruticosa 'Luoyang Hong') petal transcriptome database and named as PsWD40-1 and PsWD40-2. Sequences of Open Reading Frame (ORF) in PsWD40-1 and PsWD40-2 were amplified with designed specific primers using RT-PCR technology and sequenced. Results showed that PsWD40-1 contains a 1035 bp ORF encoding 344 amino acid residues, and PsWD40-2 contains a 1032 bp ORF encoding 343 amino acid residues. The predicted protein sequences of PsWD40-1 and PsWD40-2 genes both contain the typical WD40 structural domain. PsWD40-1 shares high similarity (96%) with VvWDR2 of Vitis vinifera, and PsWD40-2 shares 87% similarity with VvWDR1 of Vitis vinifera. Phylogenetic tree analysis showed that PsWD40-1 is grouped into the MP1 clade with VvWDR2 of Vitis vinifera, AtAN11 of Arabidopsis thaliana, and GhTTG2 of Gossypium hirsutum, while PsWD40-2 is grouped into the other clade, TTG1/PAC1 clade, with VvWDR1 of Vitis vinifera, PhAN11 of Petunia hybrida, and PfWD40 of Perilla frutescens.
Keywords: Landscape plant and ornamental horticulture anthocyanin biosynthesis regulatory gene Paeonia suffruticosa
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牡丹bHLH类转录因子基因的分离与序列分析
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