杨铭
以核酸与蛋白相互作用为基础的药物设计及抗肿瘤抗病毒药物小分子与作用靶的分子识别研究
个性化签名
- 姓名:杨铭
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学术头衔:
博士生导师
- 职称:-
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学科领域:
光学
- 研究兴趣:以核酸与蛋白相互作用为基础的药物设计及抗肿瘤抗病毒药物小分子与作用靶的分子识别研究
杨铭,女,药物化学家,博士生导师,国务院政府特殊津贴获得者。国际CIE光生物光化学第六分部学术委员,国际杂志J. Bioinorg. Chem and Appl. 编委。
主要研究方向是以核酸与蛋白相互作用为基础的药物设计及抗肿瘤抗病毒药物小分子与作用靶的分子识别研究。
作为项目负责人,曾获七项国家自然科学基金(No.39170195;No.39470828 ;No.39870183;No.39740031;No.30171107;No.30240089;No.30370323)、三项国家博士点基金(No.9501024;No.9930;No.20030001041)、一项国家新药研究基金(No.9329N-7)、一项北京大学创建世界一流大学计划基金(985)、一项北京大学生命科学跨学科研究基金及一项北京市自然科学基金(No.7012018)。
在完成上述基金项目过程中,作为第一完成人,曾获得国家教委科技进步三等奖(1995年)、国家教委科技进步一等奖(1997年)、国家教育部科技进步二等奖(1999年), 国家教育部自然科学二等奖(2003年)、北京市科技进步三等奖(2000年)及北京市自然科学二等奖(2004年),并申请专利四项。
作为第一作者或责任作者发表论文七十余篇(SCI收录26篇,CJFD收录27篇)。主编专著三部:药物研究中的分子识别(北京医科大学、中国协和医科大学联合出版社,1999年4月出版),结构生物学概论(北京大学医学部出版社,2002年7月出版),结构生物学与药学研究(科学技术出版社,2003年10月出版);参编专著二部:以核酸为作用靶的药物研究(张礼和主编,杨铭参编,科学技术出版社,1997年4月出版),受体研究技术(贺师鹏等主编,杨铭参编,北京大学医学部出版社,2004年4月出版)。
杨铭教授曾应邀在国际会议上十多次宣读科研论文,并应邀在北京大学(93年1月、2002年10月)、南开大学(96年11月)、中南民族学院(98年5月)、希腊艾奥尼娜大学(2001年9月)、中科院研究生院作学术报告(2004年11月)。
在北京大学医学部主讲及负责开设的研究生选修课程:《药物研究中的分子识别》,《高级生化实验》及《结构生物学导论》,1999年获北京医科大学教学优秀奖。曾指导六名硕士研究生,十名博士研究生,三名博士后研究生。
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17
【期刊论文】The Syntheses of b-Carboline-3-carboxamides Derivatives and Their Interaction with DNA*
杨铭, Lin Wei, Xiao Sulong, Yang Ming**
Journal of Chinese Pharmaceutical Sciences 2001, 10 (3),-0001,():
-1年11月30日
Abstract To study the interactions of these compounds with calf thymus DNA(CT-DNA), seven b-carboline-3-carboxamides were designed and synthesized. The interactions of these compounds with CT-DNA were determined by the viscometric titration assay and Tm (melting temperature) value assay. Binding strengths were evaluated by spectrophotometric titration experiment and microcalorimetric measurement. The interactions of these compounds were tested with CT-DNA. It was showed that all of these compounds were able to change the Tm value of CT-DNA. The results of viscometric titration assay indicated that these compounds interacted with CT-DNA by intercalation. Spectrophotometric titration experiment showed that the binding strengths of these compounds with CT-DNA were different, which was well in agreement with the cell culture results. The binding was driven by entropy according to the results of the microcalorimetric measurement. This series of b-carboline-3-carboxamides is DNA targeting compounds. Their obvious antitumor biological effect is based on the intercalation with DNA base-pairs.
b-Carboline-3-carboxamides, Chemical synthesis, CT-DNA
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杨铭, Zhi-Dong Xu a, He Liu b, Su-Long Xiao a, Ming Yang a, *, Xian-He Bu b
Journal of Inorganic Biochemistry 90 (2002) 79-84,-0001,():
-1年11月30日
The complex [Mn(L)(NO) (HO)] (1) (L52H-5-hydroxy-1, 2, 5-oxadiazo[3, 4-f]1,10-phenanthroline) was synthesized and character-3222 ized by elemental analysis, IR and UV. The crystal and molecular structure of 1 was determined by single-crystal X-ray diffraction; crystal data: light yellow, monoclinic, space group P2/n, Z54, a 57.432 (2) A, b59.582(3) A, c 523.445(7) A, b 590.519 (5)8. The Mn atom in 11 is hexa-coordinated in a distorted octahedral arrangement by two N atoms of the ligand L and four O atoms of two water molecules and two nitrate anions. Biological tests in vitro showed that 1 has significant antitumor activity against HL-60, KB, Hela and BGC-823 cells. The interaction of 1 with calf thymus DNA was investigated by absorption titration, thermal denaturation and viscosity measurements. The results suggest that 1 binds with DNA by intercalating via the ligand L.
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【期刊论文】Synthesis, Biological Evaluation and DNA Binding Properties of Novel Bleomycin Analogues
杨铭, Zhi-Dong Xu, Min Wang, Su-Long Xiao, Chun-Li Liu, and Ming Yang*
Bioorganic & Medicinal Chemistry Letters 13 (2003) 2595-2599,-0001,():
-1年11月30日
Aseries of bleomycin analogues was prepared with a facile synthetic method. All the compounds were shown to display significant antitumor activity against HeLa and BGC-823 cell lines in vitro. The binding properties with CT-DNAand cleavage efficiency to pBR322 DNAwere investigated, the results indicate that there is a positive relationship between DNAcleavage efficiency and the binding affinity to DNA, and the antitumor activity of the bleomycin analogues is enhanced as the hydrophobicity of the C-terminus substituent side chain increased.
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杨铭, Min Wang, a, b Zhidong Xu, b Pengfei Tu, a Xiaolin Yu, a Sulong Xiao a and Ming Yang a, *
Bioorganic & Medicinal Chemistry Letters 14 (2004) 2585-2588,-0001,():
-1年11月30日
Replication of HIV-1 requires specific interactions of Tat protein with TAR RNA. Disruption of Tat-TAR RNA interaction could inhibit HIV-1 replication. Here four target compounds were designed and synthesized to bind to TAR RNA for blocking the interaction of Tat-TAR RNA. The core molecule 6,60-diamino-6,60-dideoxy-a,a-trehalose was obtained from selective bromination of, a,a-trehalose at C-6,60, followed by acetylation, azide displacement, deacetylation, and reduction. Coupling of the core molecule with the protected amino acid, then deprotection and guanidinylation generated the novel a,a-trehalose derivatives. Their abilities to inhibit Tat-TAR RNA interaction in human cells were determined by a Tat-dependent HIV-1 LTR-driven CAT assays.
a,, a-Trehalose, Guanidino groups, Tat-TAR interaction, *, Corresponding author.,
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【期刊论文】Synthesis of unimolecularly circular G-quadruplexes as prospective molecular probes
杨铭, Tianyan Zhou, , Guoshu Chen, Yifan Wang, Qiang Zhang, Ming Yang and Tianhu Li, *
Nucleic Acids Research, 2004, Vol. 32, No.21,-0001,():
-1年11月30日
Synthesis of unimolecularly circular G-quadruplex has been accomplished for the first time during our investigation on the template basis of G-quadruplex through chemical ligations of guanine-rich linear sequencesofoligodeoxyribonucleotides. Theuniqueness of this newly designed circularization course is its self-recognition and self-templating on the scale of individual strand of zligodeoxyribonucleotide in which the same linear sequence serves both as a template and as a substrate simultaneously. The results from our exonuclease and DNAse hydrolysis studies confirm that there is indeed absence of open termini within the structure of the identified circular product. Our subsequent investigation on the loopsize effect indicates that the unimolecularly circular G-uadruplex possessing two or more thymine nucleotides within their connecting loops is readily attainable, while the linear sequence with a single thymine nucleotide between guanine tracts is not a proper precursor for our ligation reaction. In addition, conformation dependency of the circularization course as well as the effects of alkali ions, pH values and concentration of potassium ions on the circularization reaction are examined during our investigation. The implication of our current studies and possible application of the obtained unimolecularly circular G-quadruplex in certain biological processes are also discussed in this report.
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【期刊论文】Design and Synthesis of Guanidinoglycosides Directed against the TAR RNA of HIV-1
杨铭, by Min Wang a), Peng-Fei Tu b), Zhi-Dong Xu a), Xiao-Lin Yu a), and Ming Yang*a)
HEL VETICA CHIMICA ACTA-Vol.86 (2003),-0001,():
-1年11月30日
Replication of human immunodeficiency virus type 1 (HIV-1) requires specific interactions of the Tat protein with the transactivation responsive region (TAR) RNA. Tat-TAR RNA Interaction is mediated by a short arginine-rich domain of the protein. Disruption of this interaction could, in theory, create a state of complete viral latency. Here, four novel 6-amino-6-deoxytrehalose guanidinoglycoside derivatives (10 and 13
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【期刊论文】Novel Bleomycin Analogues: Synthesis, Antitumor Activity, and Interaction with DNA
杨铭, by Zhi-Dong Xu a)b), Min Wang a)b), Su-Long Xiao a), Yan-Juan Zhang a), and Ming Yang*a)
HEL VETICA CHIMICA ACTA-Vol.87 (2004),-0001,():
-1年11月30日
The novel analogues 11
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【期刊论文】抗人类免疫缺陷病毒-1活性小分子生物效应机制的研究
杨铭, 庞瑞芳, 郝美荣
Chinese Remedies & Clinics, October 2003, Vol 3, No.5,-0001,():
-1年11月30日
目的 研究小分子化合物大环多胺类MP-A、MP-B和MP-C抗人类免疫缺陷病毒(HIV)-1的生物活性机制。方法 通过核酸Tm测定及圆二色(CD)光谱法观察大环多胺类化合物对聚腺尿苷酸PolyA:PolyU构象的影响;核酸断裂实验用琼脂糖凝胶电泳法、流式细胞计数法研究其对细胞凋亡和周期的影响;计算机分子模型Docking计算从理论上判断其与TAR RNA结合的可能性。结果 ①MP-A、MP-B 和MP-C不仅可引起PolyA:PolyU构象的变化使其发生断裂,而且可抑制Tat-RNA相互结合。②MP-A、MP-B和MP-C可影响细胞亚二倍体的含量。③分子模型理论计算结果与实验结果基本一致。结论 大环多胺MP-A、MP-B 和MP-C可能通过与病毒基因组RNA的作用抑制HIV-1 RNA与Tat蛋白的结合而发挥抗HIV-1的活性。
大环多胺, 细胞凋亡, 电泳,, 琼脂凝胶, 流式细胞术
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【期刊论文】具有抗肿瘤活性的6, 7-二氰基-二吡啶基[2, 2-d: 2', 3'-f ]喹喔啉合钴(II)配合物的合成、晶体结构及与DNA结合的研究
杨铭, 徐志栋, 刘河, 王敏, 肖苏龙, 卜显和
Journal of Chinese Pharmaceutical Sciences 2002, 11(4),-0001,():
-1年11月30日
合成了6, 7-二氰基-二吡啶[2, 2-d:2', 3'-f]喹喔啉(L)与钴(II)形成的配合物[CoL(NO3) 2(CH3CN)] (1)。通过元素分析、IR对其组成和性质进行了表征,并测定了它的晶体结构。结果表明,钴原子与3个N原子和四个O氧原子形成变形五角双锥配位构型。体外抗肿瘤活性筛选试验结果表明:该配合物具有强的抗肿瘤活性,且配合物活性明显优于配体。通过紫外滴定、粘度滴定、解链温度测定等方法研究了化合物及配体与CT-DNA 的作用模式及结合常数,结果表明配合物与CT--NA的作用模式为典型的嵌插作用,配合物和配体与CT-DNA的结合常数分别为4.43×105 mol·L-1和1.65×105 mol·L-1。
Co (, II), 配合物, 6,, 7-二氰基-二吡啶基[2,, 2-d: 2', ,, 3', -f]喹喔啉, 抗肿瘤活性, 晶体结构, DNA结合
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【期刊论文】抗HIV-1活性的大环多胺类化合物与RNA的识别作用及其对细胞凋亡的影响*
杨铭, 郝美荣), 杨铭)**, 卜显和)
生物化学与生物物理进展,2002,29(2):211~216,-0001,():
-1年11月30日
研究了具有抗HIV-1活性的大环多胺类化合物与RNA的识别作用,以及其对cos-7细胞凋亡的影响,以进一步探讨其抗HIV-1的作用机理。实验采用琼脂糖凝胶电泳方法,观察化合物与RNA的识别作用;通过流式细胞计数法探讨其对cos-7细胞凋亡的影响;运用计算机分子模型,从理论上Docking计算化合物与TAR RNA结合的可能性。结果表明,大环多胺类化合物MP-1、MP-2和MP-3不仅具有断裂RNA的作用,并可抑制Tat-RNA的相互作用,还可影响cos-7细胞亚二倍体的含量;理论化学计算数据与实验结果基本一致。这一结果提示化合物的抗HIV-1活性可能通过作用于病毒基因组RNA而发挥作用,是多靶作用的结果。
HIV-1,, 大环多胺,, 凋亡,, Docking
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