To gain information on organic pollutants in wateresediment systems, a compartment model was applied to study the sorption course of phenanthrene and pentachlorophenol (PCP) in sediments. The model described the time-dependent interaction of phenanthrene and PCP with operationally defined reversible and irreversible (or slowly reversible) sediment fractions. The interactions between these fractions were described using first order differential equations. By fitting the models to the experimental data, apparent rate constants were obtained using numerical optimization software. The model optimizations showed that the amount of reversible phase increased rapidly in the first 10d with the sorption time, then decreased after 10d, while the amount of irreversible phase increased in the total sorption course. That suggested the mass transport between reversible phase and irreversible phase. The extraction efficiency with hot methanol ranged from 36% to 103% for phenanthrene and from 65% to 101% for PCP, with the trend of decreasing with sorption time.