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2010年10月28日

【期刊论文】Serum levels of preS antigen (HBpreSAg) in chronic hepatitis B virus infected patients

郑晓峰, Min Lian†, , Xu Zhou†, Lai Wei†, Shihong Qiu, Tong Zhou, Lanfen Li, Xiaocheng Gu, Ming Luo, and Xiaofeng Zheng*

Virology Journal 2007, 4: 93,-0001,():

-1年11月30日

摘要

Background: Hepatitis B virus (HBV) infection is a serious health problem worldwide. Treatment recommendation and response are mainly indicated by viral load, e antigen (HBeAg) seroconversion, and ALT levels. The S antigen (HBsAg) seroconversion is much less frequent. Since HBeAg can be negative in the presence of high viral replication, preS antigen (HBpreSAg) might be a useful indicator in management of chronic HBV infection.Results: A new assay of double antibody sandwich ELISA was established to detect preS antigens. Sera of 104 HBeAg-negative and 50 HBeAg-positive chronic hepatitis B patients have been studied and 23 HBeAg-positive patients were enrolled in a treatment follow-up study. 70% of the HbeAgpositive patients and 47% of the HBeAg-negative patients showed HBpreSAg positive. Particularly, in the HBeAg-negative patients, 30 out of 47 HBpreSAg positive patients showed no evidence of viral replication based on HBV DNA copies. A comparison with HBV DNA copies demonstrated that the overall accuracy of the HBpreSAg test could reach 72% for active HBV replication. HBpreSAg changes were well correlated with changes of HBsAg, HBV DNA and ALT levels during the course of IFN-α treatment and follow-up. HBeAg positive patients responded well to treatment when reduction of HBpreSAg levels was more pronounced.Conclusion: Our results suggested that HBpreSAg could be detected effectively, and well correlated with HBsAg and HBV DNA copies. The reduction of HBpreSAg levels in conjunction with the HBV DNA copies appears to be an improved predictor of treatment outcome.

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2010年10月28日

【期刊论文】Soluble expression, puriWcation, and stabilization of a pro-apoptotic human protein, CARP

郑晓峰, Qiang Chen a, b, Rutai Hui c, Changhong Sun a, Xiaocheng Gu b, Ming Luo a, d, Xiaofeng Zheng a, ¤

Protein Expression and PuriWcation 45(2006)329-334,-0001,():

-1年11月30日

摘要

CARP is a novel pro-apoptotic protein that has been cloned and characterized in our previous report. Previous studies showed that suppression of CARP expression results in cell proliferation in several mammalian cell lines and over-expression of CARP leads to apoptosis and inhibition of proliferation in seven tumor cell lines [Liu et al., CARP is a novel caspase recruitment domain containing pro-apoptotic protein, Biochem. Biophys. Res. Commun. 293 (2002) 1396]. To obtain soluble and active form of CARP protein for further functional and structural studies, we have expressed CARP in Escherichia coli by using Gateway cloning system. Optimal induction and expression conditions were also studied. Recombinant histidine-tagged CARP was expressed in E. coli when the carp gene was subcloned into a Gateway expression vector pET21-DEST. The partially soluble recombinant CARP protein was puriWed to near homogeneity by a two-step FPLC procedure, Wrst by Ni2+ aYnity chromatography followed by a gel-Wltration chromatography, which yielded about 10mg protein/L culture with at least 95% purity. Two peaks were detected in the analytical gel-Wltration chromatograph while only one peak corresponding to monomer of the CARP protein was left after adding 2mM dithiothreitol (DTT). The polymers observed are likely due to the formation of intermolecular disulWde bridges. These results suggest that adding DTT is a good solution to prevent the formation of disulWde bonds and to stabilize the protein. Successfully growing crystals of the puriWed CARP protein also proved that we can produce well folded CARP protein in E. coli.

CARP, Escherichia coli, Soluble expression, Protein puriWcation, Protein stabilization

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2010年10月28日

【期刊论文】The crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus

郑晓峰, Hui Ren*†‡, Liya Wang‡§, Matthew Bennett*‡, Yuhe Liang*, Xiaofeng Zheng†, Fei Lu, Lanfen Li*†, Jie Nan†, Ming Luo†, Staffan Eriksson§, Chuanmao Zhang, and Xiao-Dong Su*†**

PNAS January 11, 2005 vol. 102 no.2 303-308,-0001,():

-1年11月30日

摘要

Adenylate kinases (AKs) play important roles in nucleotide metabolism in all organisms and in cellular energetics by means of phosphotransfer networks in eukaryotes. The crystal structure of a human AK named AK6 was determined by in-house sulfur single-wavelength anomalous dispersion phasing methods and refined to 2.0-Å resolution with a free R factor of 21.8%. Sequence analyses revealed that human AK6 belongs to a distinct subfamily of AKs present in all eukaryotic organisms sequenced so far. Enzymatic assays show that human AK6 has properties similar with other AKs, particularly with AK5. Fluorescence microscopy showed that human AK6 is localized predominantly to the nucleus of HeLa cells. The identification of a nuclear-localized AK sheds light on nucleotide metabolism in the nucleus and the energetic communication between mitochondria and nucleus by means of phosphotransfer networks.

x-ray crystallographyㄧnuclear localizationㄧnucleotide metabolismㄧphosphotransfer networks

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2010年10月28日

【期刊论文】Efficient construction of long DNA duplexes with internal non-Watson–Crick motifs and modifications

郑晓峰, Xiaofeng Zheng and Philip C. Bevilacqua*

Nucleic Acids Research, 2001, Vol. 29, No.2 e6,-0001,():

-1年11月30日

摘要

We have developed a semi-synthetic approach for preparing long stretches of DNA (>100 bp) containing internal chemical modifications and/or non-Watson-Crick structural motifs which relies on splint-free, cell-free DNA ligations and recycling of side-products by non-PCR thermal cycling. A double-stranded DNA PCR fragment containing a polylinker in its middle is digested with two restriction enzymes and a small insert (<20 bp) containing the modification or non-Watson-Crick motif of interest is introduced into the middle. Incorrect products are recycled to starting materials by digestion with appropriate restriction enzymes, while the correct product is resistant to digestion since it does not contain these restriction sites. This semi-synthetic approach offers several advantages over DNA splint-mediated ligations, including fewer steps, substantially higher yields (<60%overall yield) and ease of use. Thismethod has numerous potential applications, including the introduction of modifications such as fluorophores and cross-linking agents into DNA, controlling the shape of DNA on a large scale and the study of nonsequence-specific nucleic acid-protein interactions.

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2010年10月28日

【期刊论文】Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR

郑晓峰, Xiaofeng Zheng and Philip C. Bevilacqua†

14162–14167ㄧPNASㄧDecember 19, 2000ㄧvol. 97ㄧno.26 ,-0001,():

-1年11月30日

摘要

†To whom reprint requests should be addressed. E-mail: pcb@chem.psu.edu. The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. §1734 solely to indicate this fact.

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    北京大学,北京

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